FastQCFastQC Report
Sun 4 Sep 2022
EGAF00004948670

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004948670
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3248685
Sequences flagged as poor quality0
Sequence length16
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ACAGCCGACCAGGGAT569161.7519704126438853No Hit
GAAGCAGTGGAACCTT184520.5679836610813298No Hit
GTTCTTCCTAACGTAA170910.5260897870984721No Hit
GATACGTACCGCTCGA162600.5005102064373739No Hit
TGTCCCATGAGACAAT131500.4047791644927102No Hit
CGCTTAAGATAATAGG131460.4046560377506591No Hit
CATGGAGGATCGACAT129600.3989306442452869No Hit
AAAGCATGATCTTTGT119910.3691031909834287No Hit
TGAGCGCACAGGACAC116690.35919148824832203No Hit
TGTCGAAACTTCGCAA109510.3370902380501649No Hit
TAATTGCCTGTCTGGC107930.33222673173914985No Hit
GGGGGGGGGGGGGGGG93710.28845517494001416No Hit
GGAAGGACTAGGTAAT90420.2783280004063182No Hit
AATGATGGAAAGCTAA84810.2610594748336635No Hit
CATGTCAGAGGTTTGT83970.25847381325059215No Hit
TCGACCTTGTTTCGCC79340.24422189285818724No Hit
ATGGGTACTTGGCTGC65980.20309756101314838No Hit
GCTATGATGACCTGCG65900.20285130752904634No Hit
AAACGACCTAGGGAGG61770.19013847141227913No Hit
TTGCGATGACATTCAG61600.18961518275856232No Hit
AGCCTACCTTAACTCG61250.18853782376561593No Hit
CAGCTCACTGTTTACG61180.18832235196702665No Hit
TGTTCCTCTTTATGGC57630.17739485360999913No Hit
CCTGTTGACCCTAGTA55360.17040741099860404No Hit
CAATGTGACCAACGCC54830.16877598166642813No Hit
CTGCCTTGACCATAAC54680.1683142563837368No Hit
TAACCAGACATCACAC52340.16111134197375246No Hit
AGCTTGTGACTCACTC52200.16068039837657389No Hit
GTGAGATCTCGATTAC52100.16037258152144637No Hit
CACAGCTCTGGACTGA51590.15880271556029593No Hit
CATGCAAACGAAGGCT51030.15707894117158175No Hit
CATGATGTGTCATGTG51010.15701737780055625No Hit
CTATTCAACCGAACGA50640.15587845543658435No Hit
ATGGGTACTTTCGGGC49670.15289263194184724No Hit
TGGGCCATGCGTTCTC48660.14978368170505912No Hit
TTGTTTGTGATACGCT48610.14962977327749535No Hit
ATGCCGCGATGCCACG48120.14812147068737044No Hit
CCGCTATTGTTCGCAA47960.14762896371916637No Hit
ATTAGCGTGGTCGGTC47560.14639769629865623No Hit
CATTAGTCTATTCTGG46960.14455079516789102No Hit
AGAACGCGAGGAATAT46580.14338109111840638No Hit
GGGCTGACTAATACAG46230.14230373212546No Hit
GGGTCGTACCGCTCGA46110.14193435189930695No Hit
CACTATACTACGCCAC46000.14159575335866667No Hit
GCATCTCTGAGCCTAT45610.14039526762366927No Hit
GCAGATACTCGGCTCA44600.13728631738688116No Hit
AGCTCGGACCTTAAGC43620.13426971220663128No Hit
AACGTCCCTTACAGAA43520.13396189535150377No Hit
AACCAACACCGGAATG42780.13168405062356No Hit
ATAGGAAACAGACTTC42520.1308837268002284No Hit
GGCTTGCGAGTACGTT42280.1301449663479223No Hit
GGTAGCCTGTGCCACG42200.1298987128638203No Hit
CTGCCATTGCACAGTT41830.1287597904998484No Hit
TTGACGTGACCTCAAA41500.1277439948779275No Hit
TTGTAACCTCATCCTC41210.12685132599805768No Hit
CCTACGGGATGGAACG40860.12577396700511131No Hit
CCCAATGCTGGAATGC40810.12562005857754752No Hit
CTGATTACTGCTTTGA40650.12512755160934347No Hit
TGGAGTTACAAGTCTC40530.12475817138319044No Hit
GATACCATGTCTGGAT40400.12435800947152463No Hit
ATAGCCAACATGGCCC40330.12414253767293537No Hit
ATCTTACTGCGCACTG40130.12352690396268029No Hit
TGTTTGTTGCGCTCGA39960.12300361530896348No Hit
CGCTTACTGGCCACGT39950.12297283362345073No Hit
GGGATCAGATGAGTAA39760.12238798159870841No Hit
CGATCAAACCGATCGC39200.12066420720999421No Hit
TCAGGCTCTTAAAGCA39200.12066420720999421No Hit
CGCTGAGTGTTAGCTG38710.11915590461986927No Hit
CGCTTCCCTGCGCTGT38400.11820167236897391No Hit
TTCTAACACTACGTTG37830.11644711629474695No Hit
CATGTTACTAACGTGG37590.11570835584244087No Hit
TCCAAAGTGAAGGCCA37170.11441552505090521No Hit
TGGGTGCACTTCTGAG37150.1143539616798797No Hit
CCTCCCTTGTTTCGCC36690.11293800414629304No Hit
CTCGGATCTTTCTGAG36390.11201455358091042No Hit
AGTGGTACTCAACGCC36360.11192220852437217No Hit
GCATAGTACGCTCCTT36150.11127579312860435No Hit
TACGCCTTGGGTTGAG35580.1095212370543774No Hit
AACCACTGAAAACATG35530.10936732862681363No Hit
AGCCGGTACGCGCAAA35530.10936732862681363No Hit
CCTTCAGTGTAGCTTG35310.10869013154553304No Hit
ACCTGCTTGCCAAACT35250.10850544143245651No Hit
TACAACCGATTCCATT35100.10804371614976521No Hit
ATCGCAATGTAACTCG34940.10755120918156116No Hit
CTTAGGCCTTATGACC34710.10684323041476781No Hit
TGAGATAGACTCATCC34280.10551961793771941No Hit
TTCACGCTGTGGGCAA34180.10521180108259189No Hit
AACAGCTACTCGAGAG34180.10521180108259189No Hit
GTCCTGACTTTACGAC33990.10462694905784957No Hit
AGAACAATGAGTCGGA33870.10425756883169651No Hit
TATCTCCCTGGAATTA33640.10354959006490319No Hit
TGGTCCTTGTTTCTGT33400.1028108296125971No Hit
ATTGAGAGATGATCAC33270.10241066770093131No Hit
ACCTCCATGGAATTGA33270.10241066770093131No Hit
AGAACATGAAAGCTAA33230.10228754095888029No Hit
CGAGTCTCTTACTTTC33120.10194894241823999No Hit
CATGTCAGAACAGGTG32950.10142565376452317No Hit
GTGTACTGAATCACAC32830.10105627353837014No Hit
GAAAGTAACCCTGCGA32590.10031751308606406No Hit
GTAAGAAACGACAAAT32560.10022516802952579No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)