FastQCFastQC Report
Sun 4 Sep 2022
EGAF00004948676

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004948676
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences4397606
Sequences flagged as poor quality0
Sequence length16
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TGGCCGATGGTTAGAA181250.4121560685518439No Hit
CATTCAACTAGGCATG159540.3627882989062685No Hit
GTCGACCGATGCTCAA153600.3492809496803488No Hit
GGGGGGGGGGGGGGGG131710.2995038664218668No Hit
ACTGGGCACTTCTCGC125540.285473505357233No Hit
TGTAAGCTGTTGTGAC122680.2789699668410494No Hit
GCTTTAGGAACTAGTC92200.2096595283888552No Hit
TAGTTGCGACATAGCT71770.16320243332394943No Hit
CATCAGTGATTCGCAA70900.16122408419490059No Hit
CAGGAGCCTCGTGCAC59140.1344822614849989No Hit
CAGGAGCCTTCCAATG53480.12161162232360062No Hit
TCCTTAAACAGGGAGG49700.1130160364525608No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)