FastQCFastQC Report
Sun 4 Sep 2022
EGAF00004948684

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004948684
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences4059298
Sequences flagged as poor quality0
Sequence length16
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGG131570.32412008184666413No Hit
GGACACCTGGCTCCTT116960.28812863702048974No Hit
TCGCGGTGAGTCTTGA101880.2509793565291339No Hit
GTTAAGAGAGTACGTT83770.2063657312175652No Hit
CGCTTACTGATCACAC71800.1768778739575168No Hit
TACCAGTGATACGATC68380.16845277188321725No Hit
TTGTGGTGAAAGACAT66810.16458510806548324No Hit
ATCTTACTGGTTTGGT66390.16355044640723593No Hit
ATAGATGGAGAGTAAT65860.16224480193373336No Hit
ATTCCTAACTGCGTGC63960.15756418967023364No Hit
ATATGCCGAGAACAGC62910.15497753552461535No Hit
TGGAACACTTGAGGCA58130.14320210046170545No Hit
GCTATACGACAGGTGA57620.14194572559097657No Hit
CTTTCTGCTCTTGTGA55100.13573775564149268No Hit
CTTGACGCTCAGGGTA54510.1342843023596691No Hit
AGGTAGCGATTGACCA53430.13162374380989028No Hit
AGCTCTGCTGGCCTGT53220.1311064129807666No Hit
TGTGACTGACCGTTAA50190.12364206816055387No Hit
GCGGTTCGAAGCAAGC49950.12305083292726969No Hit
ACTGGAACTCTGGAAG49800.12268131090646707No Hit
AGTTCACGACCAGAGA49560.12209007567318289No Hit
ACCCTTTCTAGGTGAC46900.11553721850428327No Hit
TGTACCCTGCTGAGAG46160.11371424320165703No Hit
ACACTCCACCGTACAT45040.11095514544633087No Hit
TTCCAAACTCCGCTAG44960.11075806703523615No Hit
TCAGTCCACCCAGCAC44170.10881191772567572No Hit
ACATGTGTGTCAATGC44070.10856556971180732No Hit
CAGTGGAGAGATCATC42600.10494425390794172No Hit
CACAGCTCTCTCTGGG42520.104747175496847No Hit
TCCCAGACTCCTAACA41940.10331835701641023No Hit
GAACTACTGGCCCTGA41030.10107659009020772No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)