FastQCFastQC Report
Sat 3 Sep 2022
EGAF00004948685

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004948685
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences4312861
Sequences flagged as poor quality0
Sequence length8
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATTGGACG417657496.83998626433822No Hit
ATTGGCCG457351.060432970132819No Hit
ATTGGACC129280.299754617642442No Hit
ATTGGACA91900.21308361201531884No Hit
AATGGACG78660.18238473254760587No Hit
ATAGGACG78370.18171232506681761No Hit
ATTGCACG73240.16981766859632155No Hit
ATTGGAAG58000.13448149615765498No Hit
ATTCGACG54250.12578657183711695No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)