FastQCFastQC Report
Sat 3 Sep 2022
EGAF00004948688

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004948688
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences4059298
Sequences flagged as poor quality0
Sequence length8
%GC75

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GCGCACCT394432797.16771224975352No Hit
GCGCCCCT331660.8170378227959612No Hit
GCGCACCA257100.6333607436556764No Hit
GCGCACAT75570.18616519408035576No Hit
GCGCGCCT52200.12859366323930888No Hit
GCGCACCG49530.1220161712690224No Hit
GCCCACCT44150.10876264812290204No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)