FastQCFastQC Report
Sat 3 Sep 2022
EGAF00004948690

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004948690
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences4203856
Sequences flagged as poor quality0
Sequence length8
%GC24

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TAGGTAAA412829298.20250741224248No Hit
TAGGAAAA130300.30995352837965906No Hit
AAGGTAAA125020.2973936309902147No Hit
TAGCTAAA84480.2009583582311097No Hit
TACGTAAA72450.17234177383811433No Hit
TATGTAAA56540.13449556787863332No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)