FastQCFastQC Report
Fri 2 Sep 2022
EGAF00004948693

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004948693
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences843145
Sequences flagged as poor quality0
Sequence length16
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TGGCCGATGGTTAGAA32430.3846313504794549No Hit
GTCGACCGATGCTCAA29000.34395032882837473No Hit
CATTCAACTAGGCATG27360.32449934471532177No Hit
GGGGGGGGGGGGGGGG23360.2770579200493391No Hit
ACTGGGCACTTCTCGC21970.2605720249779101No Hit
TGTAAGCTGTTGTGAC21740.25784414305961606No Hit
GCTTTAGGAACTAGTC19780.23459784497328454No Hit
TAGTTGCGACATAGCT12660.1501521090678353No Hit
CATCAGTGATTCGCAA11500.13639409591470034No Hit
CAGGAGCCTCGTGCAC10020.1188407687882867No Hit
CAGGAGCCTTCCAATG9400.1114873479650594No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)