FastQCFastQC Report
Fri 2 Sep 2022
EGAF00004948700

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004948700
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1391827
Sequences flagged as poor quality0
Sequence length16
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GCCGTTTACAGTCTGT276271.9849449680168583No Hit
GGCTTGCGACGACATT120190.8635412303396902No Hit
AAATAGGTGTTGCGTA117650.8452918358387932No Hit
TATCACTACTGGTCCG102100.7335681805281834No Hit
ATGGGTTACCATGCGC97920.703535712412534No Hit
CTAATCTTGCCACTTC64840.4658624958417964No Hit
GTGTTGTGAGGGTAGT62790.45113365382335596No Hit
CTGCTTTCTCCACTTC58180.4180117212843263No Hit
AGAGAATTGCCTCCTA53410.3837402205877598No Hit
GGGGGGGGGGGGGGGG45480.3267647487798412No Hit
CTGGCCAGAGGAATGC40940.2941457523097339No Hit
AGCCGAGCTGCCCTTT40810.29321172818173524No Hit
AATGGTGCTTCGTACA36400.26152675583962665No Hit
GCTCCTAACCTATCTT33600.24140931308273225No Hit
TCCCTGTGACCCGCAA31900.22919515140890356No Hit
GAGAGAAGACTCACGG29150.20943694870123944No Hit
TGCCGTTACAATCTGC27950.20081518751971328No Hit
TTGTCAACTAATACAG27190.1953547387714134No Hit
GCTGTTCTGATAGGTA27110.194779954692645No Hit
CTTAATCTGGGAATTA26940.1935585385252621No Hit
TCTTTCCACCGAGTGA26310.18903211390496089No Hit
TAGCGCGACAAGACAT24660.1771771922803624No Hit
GGGATGTGAAGGTGCA24090.1730818557191375No Hit
GTAATCGTGATCCTCC23990.172363375620677No Hit
AGTCCTGCTCCTAGTA23760.1707108713942178No Hit
TCGTATACTTTCTGGA22940.16481933458684161No Hit
GCAAATCTGGAATTGA22570.1621609582225377No Hit
TGCAATGACACCTTGA20320.1459951560071762No Hit
TTGCGTCACCACTCAA20260.14556406794809987No Hit
GTTGTTGGATTCCATT20010.1437678677019486No Hit
TGTCAATCTGGTGTCC19970.1434804756625644No Hit
CCTTTCTACTCGGGCT19850.14261829954441177No Hit
TACGCCTTGCTGATCA17860.12832054558504755No Hit
TACAACCGATCGCTAA17730.1273865214570489No Hit
TAAGGGCGATTTCTTG17680.12702728140781863No Hit
TTGTTTGTGGCGCTGT17670.1269554333979726No Hit
CAAGTGGGATAGCGAG17550.12609325727981996No Hit
GGTTGAACTTCTTTGT17200.1235785769352082No Hit
GCTCCTAACGAATAGT16790.12063280853152009No Hit
AGAACGCGAGGAGTCA16760.12041726450198194No Hit
CCCACCTCTCATGATC16750.12034541649213587No Hit
CTGCCATTGTCTTTGT16720.12012987246259772No Hit
CCTTTCTACTCATTTC16640.11955508838382932No Hit
AATCCAGACTACCAAC16470.11833367221644644No Hit
TTCCACTCTCGAATCT16190.116321927940757No Hit
TCTTTCCACTTCGCAA15980.11481311973398993No Hit
CGGAATTTGAGAGGCT15310.10999930307430449No Hit
AGCACATTGCTGGAAG15130.10870603889707557No Hit
TATTGCTTGTTCGTTT14640.10518548641461907No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)