FastQCFastQC Report
Fri 2 Sep 2022
EGAF00004948701

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004948701
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3176082
Sequences flagged as poor quality0
Sequence length8
%GC74

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGTACGGG310562097.78148045296061No Hit
GGTACGGA222560.7007375754152443No Hit
GGTCCGGG94380.2971585746211842No Hit
GGAACGGG47830.15059434863457555No Hit
GGTAAGGG31800.10012335953542761No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)