FastQCFastQC Report
Sun 4 Sep 2022
EGAF00004948703

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004948703
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3266114
Sequences flagged as poor quality0
Sequence length16
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GCCGTTTACAGTCTGT652761.9985830255771844No Hit
GGCTTGCGACGACATT281410.8616049531645251No Hit
AAATAGGTGTTGCGTA276360.8461431536070083No Hit
TATCACTACTGGTCCG233750.7156823062514046No Hit
ATGGGTTACCATGCGC228350.6991488968235646No Hit
GTGTTGTGAGGGTAGT152090.4656604147926251No Hit
CTAATCTTGCCACTTC147180.4506272591832373No Hit
CTGCTTTCTCCACTTC136810.4188769895968114No Hit
AGAGAATTGCCTCCTA126910.38856573897910485No Hit
AGCCGAGCTGCCCTTT97080.2972339606027224No Hit
CTGGCCAGAGGAATGC95240.29160035442731025No Hit
AATGGTGCTTCGTACA88470.27087235779277763No Hit
GGGGGGGGGGGGGGGG85510.261809600032332No Hit
GCTCCTAACCTATCTT79290.2427655617654497No Hit
TCCCTGTGACCCGCAA77570.23749936468843402No Hit
GAGAGAAGACTCACGG69810.21374024299213068No Hit
TGCCGTTACAATCTGC67020.20519798145441343No Hit
GCTGTTCTGATAGGTA66100.20238117836670735No Hit
TTGTCAACTAATACAG63650.19487990927444665No Hit
CTTAATCTGGGAATTA63650.19487990927444665No Hit
TCTTTCCACCGAGTGA61000.18676629168485853No Hit
GTAATCGTGATCCTCC59180.18119392035917914No Hit
TAGCGCGACAAGACAT57780.1769074808778873No Hit
TCGTATACTTTCTGGA57700.17666254147895633No Hit
GGGATGTGAAGGTGCA57050.17467240886264226No Hit
AGTCCTGCTCCTAGTA53550.1639563101594127No Hit
GCAAATCTGGAATTGA51820.15865949565753062No Hit
TTGCGTCACCACTCAA48620.14886191970029214No Hit
TGCAATGACACCTTGA48550.14864759772622754No Hit
GTTGTTGGATTCCATT47980.14690240450884445No Hit
TGTCAATCTGGTGTCC47600.14573894236392237No Hit
CCTTTCTACTCGGGCT44830.13725791567593784No Hit
TTGTTTGTGGCGCTGT42520.1301852905318063No Hit
GGTTGAACTTCTTTGT42330.12960355945934526No Hit
TACGCCTTGCTGATCA41910.1283176276149577No Hit
TACAACCGATCGCTAA41840.12810330564089312No Hit
TAAGGGCGATTTCTTG39490.1209082107972961No Hit
CAAGTGGGATAGCGAG39300.12032647972483508No Hit
CTGCCATTGTCTTTGT39140.11983660092697317No Hit
AATCCAGACTACCAAC39000.11940795697884397No Hit
TTCCACTCTCGAATCT38530.11796893801012456No Hit
CCTTTCTACTCATTTC38480.11781585088579273No Hit
AGAACGCGAGGAGTCA38160.11683609329006887No Hit
CCCACCTCTCATGATC38150.11680547586520251No Hit
GCTCCTAACGAATAGT37650.11527460462188398No Hit
TCTTTCCACTTCGCAA37280.11414175990182829No Hit
CGGAATTTGAGAGGCT34400.10532394154031367No Hit
AGCACATTGCTGGAAG34220.104772827892719No Hit
ATGTGTGTGCCTTTGC32810.10045577098656078No Hit
CCAGCTTTGGGAATGC32770.10033330128709532No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)