FastQCFastQC Report
Sat 3 Sep 2022
EGAF00004948713

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004948713
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences4595196
Sequences flagged as poor quality0
Sequence length8
%GC62

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ACCAGTCC445076296.85684789071021No Hit
CCCAGTCC392500.8541529022918718No Hit
ACCAGTCA286950.6244564976118537No Hit
ACCAGACC107680.2343316803026465No Hit
ACAAGTCC99940.21748800268802465No Hit
ACCACTCC96510.21002368560557588No Hit
ACCAGTAC53220.11581660499356285No Hit
ACCCGTCC47220.10275949056362339TruSeq Adapter, Index 16 (100% over 8bp)

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)