FastQCFastQC Report
Sun 4 Sep 2022
EGAF00004948716

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004948716
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3087273
Sequences flagged as poor quality0
Sequence length16
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGACACCTGGCTCCTT88930.2880535670152915No Hit
TCGCGGTGAGTCTTGA82280.2665135218038703No Hit
GGGGGGGGGGGGGGGG76040.24630150945510812No Hit
GTTAAGAGAGTACGTT57920.18760893513466415No Hit
CGCTTACTGATCACAC53780.17419904232635078No Hit
ATCTTACTGGTTTGGT49590.1606271942908839No Hit
TACCAGTGATACGATC49170.15926677038279413No Hit
TTGTGGTGAAAGACAT48210.1561572300214461No Hit
ATAGATGGAGAGTAAT46070.14922554629927448No Hit
ATTCCTAACTGCGTGC45220.14647230743766423No Hit
ATATGCCGAGAACAGC44690.14475558202983668No Hit
TGGAACACTTGAGGCA43140.13973496998807686No Hit
CTTGACGCTCAGGGTA39600.12826853990560602No Hit
CTTTCTGCTCTTGTGA39190.12694050704294696No Hit
AGGTAGCGATTGACCA38350.12421965922676745No Hit
GCTATACGACAGGTGA37520.12153120245601862No Hit
AGCTCTGCTGGCCTGT37450.12130446513800366No Hit
GCGGTTCGAAGCAAGC37230.12059186213852807No Hit
TGTGACTGACCGTTAA35920.11634863518710525No Hit
ACTGGAACTCTGGAAG35460.11485864709729265No Hit
ACGCTCTTGCCTCAAA35400.11466430082470841No Hit
TGTACCCTGCTGAGAG34430.11152236941792967No Hit
AGTTCACGACCAGAGA33480.10844522010201235No Hit
ACCCTTTCTAGGTGAC33410.1082184827839974No Hit
TTCCAAACTCCGCTAG32650.10575676333126355No Hit
ACATGTGTGTCAATGC31340.10151353637984072No Hit
ACACTCCACCGTACAT31300.1013839721981179No Hit
TCCCAGACTCCTAACA31070.10063897815321159No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)