FastQCFastQC Report
Sun 4 Sep 2022
EGAF00004948733

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004948733
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3245498
Sequences flagged as poor quality0
Sequence length16
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GCCGTTTACAGTCTGT668182.058790361294322No Hit
GGCTTGCGACGACATT281190.8664001641658691No Hit
AAATAGGTGTTGCGTA269030.8289328787138369No Hit
TATCACTACTGGTCCG232220.7155142292492555No Hit
ATGGGTTACCATGCGC225220.6939458905844342No Hit
GTGTTGTGAGGGTAGT150050.4623327452366324No Hit
CTAATCTTGCCACTTC143690.4427363689640234No Hit
CTGCTTTCTCCACTTC136260.4198431180669346No Hit
AGAGAATTGCCTCCTA127300.39223564457596344No Hit
AGCCGAGCTGCCCTTT96030.29588679456896905No Hit
CTGGCCAGAGGAATGC95020.2927747914187592No Hit
AATGGTGCTTCGTACA86060.26516731792778797No Hit
GGGGGGGGGGGGGGGG84800.2612850169681201No Hit
GCTCCTAACCTATCTT77190.2378371516482216No Hit
TCCCTGTGACCCGCAA73590.22674486319202783No Hit
GAGAGAAGACTCACGG69690.21472821736448458No Hit
TGCCGTTACAATCTGC66230.20406729568158724No Hit
GCTGTTCTGATAGGTA63470.19556320786517198No Hit
TTGTCAACTAATACAG62530.19266688810161028No Hit
CTTAATCTGGGAATTA61750.19026355893610164No Hit
TCTTTCCACCGAGTGA59480.1832692548262239No Hit
TCGTATACTTTCTGGA58850.18132810434639No Hit
GTAATCGTGATCCTCC58470.18015725167601396No Hit
GGGATGTGAAGGTGCA58200.17932533004179943No Hit
TAGCGCGACAAGACAT56450.17393324537559413No Hit
AGTCCTGCTCCTAGTA54540.16804817011133577No Hit
GCAAATCTGGAATTGA53150.16376531429074984No Hit
GTTGTTGGATTCCATT48310.14885234869964487No Hit
TTGCGTCACCACTCAA48170.14842098192634842No Hit
TGCAATGACACCTTGA47640.1467879505702977No Hit
CCTTTCTACTCGGGCT44670.13763681259393784No Hit
TGTCAATCTGGTGTCC44460.1369897624339932No Hit
TTGTTTGTGGCGCTGT43210.13313827338670367No Hit
GGTTGAACTTCTTTGT42850.1320290445410843No Hit
TACGCCTTGCTGATCA41990.12937922007654912No Hit
CAAGTGGGATAGCGAG41550.1280234959319032No Hit
TACAACCGATCGCTAA41170.1268526432615272No Hit
TAAGGGCGATTTCTTG39070.12038214166208083No Hit
CCCACCTCTCATGATC38810.11958103194024462No Hit
AGAACGCGAGGAGTCA38270.11791718867181554No Hit
GCTCCTAACGAATAGT38230.11779394102230227No Hit
CCTTTCTACTCATTTC37660.11603766201673826No Hit
TCTTTCCACTTCGCAA37430.115328988032037No Hit
CTGCCATTGTCTTTGT37390.11520574038252374No Hit
TTCCACTCTCGAATCT37250.11477437360922729No Hit
AATCCAGACTACCAAC36940.1138192043254995No Hit
CGGAATTTGAGAGGCT34900.10753357420032303No Hit
GTGGTAACTTTTCCGC33140.1021106776217394No Hit
AGCACATTGCTGGAAG32980.10161768702368634No Hit
TATTGCTTGTTCGTTT32930.10146362746179477No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)