FastQCFastQC Report
Fri 2 Sep 2022
EGAF00004948735

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004948735
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3035650
Sequences flagged as poor quality0
Sequence length8
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CCGTTATG296426297.64834549437518No Hit
CCGTTATA115060.37902920297135706No Hit
CCGGTATG93130.3067876731507256No Hit
ACGTTATG65660.2162963450990727No Hit
CCGTTTTG48480.15970220545846853No Hit
CCGATATG47300.15581506431900913No Hit
CCGTTATC40850.13456755554823516No Hit
CCGTTAAG39780.1310427750234711No Hit
CCCTTATG31300.10310806581786437No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)