FastQCFastQC Report
Sat 3 Sep 2022
EGAF00004948739

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004948739
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences6938471
Sequences flagged as poor quality0
Sequence length8
%GC62

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AGCTGCGT677928697.70576255200893No Hit
AGCTGCGG232230.3346991001331561No Hit
AGCTGCGA216190.3115816150272877No Hit
CGCTGCGT204340.2945029243474535No Hit
AGCAGCGT109930.1584354823995085No Hit
AGCGGCGT103680.14942773415065078No Hit
AGGTGCGT78820.11359851471599434No Hit
AGATGCGT72180.10402868297640791No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)