FastQCFastQC Report
Fri 9 Sep 2022
EGAF00004948748

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004948748
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences17153382
Sequences flagged as poor quality0
Sequence length8
%GC24

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TCTATTAG1680291997.95688686930659No Hit
TCTTTTAG561650.32742814215878824No Hit
TCTAATAG359020.20929983370043292No Hit
TCTATTAA354520.20667644433033672No Hit
ACTATTAG324130.18895982145095352No Hit
TCAATTAG290390.16929023092938758No Hit
TCTATTTG253340.14769099178226194No Hit
TCTATAAG228280.1330816278679038No Hit
GCTATTAG186400.1086666174635416No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)