FastQCFastQC Report
Fri 2 Sep 2022
EGAF00004948751

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004948751
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3824223
Sequences flagged as poor quality0
Sequence length8
%GC62

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGACTAC372160797.31668367665797No Hit
GGGCCTAC222760.5824974118925597No Hit
GGGACTAA101300.26489041041801176No Hit
GGGACAAC83140.21740363990279854No Hit
GGGACTCC59170.15472424071504198No Hit
CGGACTAC55220.144395345145929No Hit
GCGACTAC52250.1366290616420643No Hit
GGGAATAC51310.13417104598764246No Hit
GGCACTAC49810.13024868058165018No Hit
GGGACTTC40720.10647914622133699No Hit
TGGACTAC38820.1015108167070801No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)