FastQCFastQC Report
Mon 5 Sep 2022
EGAF00004948754

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004948754
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences17202468
Sequences flagged as poor quality0
Sequence length8
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATCCAAGG1693382898.43836361154689No Hit
ATCCAAGA522270.3036017855112418No Hit
AACCAAGG306690.178282558060855No Hit
ATCCAACG240080.13956136991506102No Hit
ATCCAAGC218360.1269352746361743No Hit
ATACAAGG196470.11421035632794085No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)