FastQCFastQC Report
Sat 3 Sep 2022
EGAF00004948758

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004948758
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences5634990
Sequences flagged as poor quality0
Sequence length8
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GCCAACAA552215497.9975829593309No Hit
CCCAACAA191450.3397521557269844RNA PCR Primer, Index 36 (100% over 8bp)
GCCAAAAA147730.26216550517392223No Hit
GACAACAA108850.1931680446637882No Hit
GCAAACAA82350.14614045455271438No Hit
ACCAACAA82110.14571454430265182No Hit
GCCCACAA76970.13659296644714544No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)