FastQCFastQC Report
Wed 8 May 2024
EGAF00004948759

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004948759
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2477463
Total Bases19.8 Mbp
Sequences flagged as poor quality0
Sequence length8
%GC37

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CTATTTGG243038998.09991107838947No Hit
CTATTTGA177880.7179925593237921No Hit
CTTTTTGG38140.15394780870592215No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.12.1)