FastQCFastQC Report
Sun 4 Sep 2022
EGAF00004948766

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004948766
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences9313980
Sequences flagged as poor quality0
Sequence length8
%GC62

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AGCTGCGT911903797.90698498386297No Hit
AGCTGCGA295170.31691070841895735No Hit
CGCTGCGT282630.3034470763304194No Hit
AGCTGCGG201490.21633072005737614No Hit
AGCAGCGT175470.18839422030109576No Hit
AGCGGCGT122210.1312113618453121No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)