FastQCFastQC Report
Sun 4 Sep 2022
EGAF00004948767

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004948767
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3401596
Sequences flagged as poor quality0
Sequence length16
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GCCGTTTACAGTCTGT660801.9426175242445016No Hit
AAATAGGTGTTGCGTA275910.8111192510809632No Hit
GGCTTGCGACGACATT263970.7760180809243661No Hit
TATCACTACTGGTCCG241130.7088731289665204No Hit
ATGGGTTACCATGCGC235460.6922044828368801No Hit
GTGTTGTGAGGGTAGT158680.4664869079102868No Hit
CTAATCTTGCCACTTC149560.439675963871077No Hit
CTGCTTTCTCCACTTC139210.40924907014236844No Hit
AGAGAATTGCCTCCTA128680.378293013044465No Hit
CTGGCCAGAGGAATGC98860.29062828154783815No Hit
AGCCGAGCTGCCCTTT98210.28871741382574534No Hit
AATGGTGCTTCGTACA90790.2669041238289321No Hit
GGGGGGGGGGGGGGGG90770.26684532789902154No Hit
TCCCTGTGACCCGCAA78260.23006847373997383No Hit
GAGAGAAGACTCACGG71240.20943110234137152No Hit
TGCCGTTACAATCTGC68920.20261077447174797No Hit
CTTAATCTGGGAATTA64950.1909397823845042No Hit
TTGTCAACTAATACAG64780.19044001698026455No Hit
TCTTTCCACCGAGTGA62520.18379607690037264No Hit
GCTGTTCTGATAGGTA61830.18176761731845875No Hit
GTAATCGTGATCCTCC60490.17782829001445202No Hit
TCGTATACTTTCTGGA60200.17697574903074909No Hit
GGGATGTGAAGGTGCA59450.17477090165910356No Hit
TAGCGCGACAAGACAT58800.17286003393701074No Hit
GCTCCTAACCTATCTT56200.16521656304863952No Hit
AGTCCTGCTCCTAGTA54720.16086566423525897No Hit
GCAAATCTGGAATTGA51470.15131132562479493No Hit
TGCAATGACACCTTGA49910.1467252430917722No Hit
TTGCGTCACCACTCAA48200.1416981910844204No Hit
GTTGTTGGATTCCATT47760.14040468062638833No Hit
TGTCAATCTGGTGTCC46510.13672993500697908No Hit
TACGCCTTGCTGATCA45330.13326097514225677No Hit
CCTTTCTACTCGGGCT45070.13249662805341964No Hit
GGTTGAACTTCTTTGT43560.12805753534517328No Hit
TTGTTTGTGGCGCTGT43450.12773415773066527No Hit
CAAGTGGGATAGCGAG42610.12526472867442226No Hit
TACAACCGATCGCTAA42380.12458857548045095No Hit
CCCACCTCTCATGATC41860.12305988130277669No Hit
GAGGTGCCTTCGTACA41500.12200155456438683No Hit
TAAGGGCGATTTCTTG41190.12109021765077334No Hit
TTCCACTCTCGAATCT40670.1195615234730991No Hit
AATCCAGACTACCAAC39580.11635714529297422No Hit
AGAACGCGAGGAGTCA39570.11632774732801897No Hit
CTGCCATTGTCTTTGT39290.11550460430927129No Hit
CCTTTCTACTCATTTC39210.1152694205896291No Hit
TCTTTCCACTTCGCAA38790.1140347060615076No Hit
GTGGTAACTTTTCCGC38490.11315276711284937No Hit
CGGAATTTGAGAGGCT36090.10609725552358364No Hit
GAGAGGTTGATGTGGG35840.10536230639970179No Hit
AGCACATTGCTGGAAG34860.10248130583408493No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)