FastQCFastQC Report
Sat 3 Sep 2022
EGAF00004948768

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004948768
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences5408063
Sequences flagged as poor quality0
Sequence length8
%GC37

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TTTATCCC526505397.35561512504569No Hit
TTTATCCA428170.7917252443250015No Hit
TTTAACCC143130.26466037840165696No Hit
ATTATCCC139900.25868781484239367No Hit
TTTATACC116600.2156039972167484No Hit
TATATCCC108740.2010701428589127No Hit
TTAATCCC82620.1527718889369447No Hit
TTTTTCCC78500.1451536344898349No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)