FastQCFastQC Report
Fri 2 Sep 2022
EGAF00004948773

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004948773
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1528801
Sequences flagged as poor quality0
Sequence length8
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CACTGACT148136296.89698005168756No Hit
CACTGCCT230071.504904824107258No Hit
CACTGACA56650.37055182459980074No Hit
CACAGACT36830.24090774404255363No Hit
CACTCACT18420.12048657738973222No Hit
CACTAACT17350.11348762854027437No Hit
AACTGACT16440.10753525148138968No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)