FastQCFastQC Report
Sun 4 Sep 2022
EGAF00004948775

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004948775
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3357390
Sequences flagged as poor quality0
Sequence length16
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TGGCCGATGGTTAGAA127230.37895508117913024No Hit
GTCGACCGATGCTCAA116810.347919068085626No Hit
CATTCAACTAGGCATG109870.3272482493841943No Hit
GGGGGGGGGGGGGGGG96370.2870384435528789No Hit
ACTGGGCACTTCTCGC89640.2669931107199342No Hit
TGTAAGCTGTTGTGAC86710.258266093602471No Hit
GCTTTAGGAACTAGTC82810.2466499274734243No Hit
CATCAGTGATTCGCAA50810.15133779513252854No Hit
TAGTTGCGACATAGCT49250.14669132868090987No Hit
CAGGAGCCTCGTGCAC40700.12122511832107678No Hit
CAGGAGCCTTCCAATG37220.11085992392900437No Hit
TCCTTAAACAGGGAGG35880.10686872838722937No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)