FastQCFastQC Report
Sun 4 Sep 2022
EGAF00004948779

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004948779
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3412992
Sequences flagged as poor quality0
Sequence length16
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TGGCCGATGGTTAGAA135400.39671935943594355No Hit
CATTCAACTAGGCATG120440.35288685118511853No Hit
GTCGACCGATGCTCAA117370.3438918110561056No Hit
GGGGGGGGGGGGGGGG111660.3271616224122412No Hit
ACTGGGCACTTCTCGC100170.29349614648964895No Hit
NNNNNNNNNNNNNNNN98130.2875189862736274No Hit
TGTAAGCTGTTGTGAC95100.2786411453645365No Hit
GCTTTAGGAACTAGTC73660.21582236348634865No Hit
TAGTTGCGACATAGCT56920.1667744899489949No Hit
CATCAGTGATTCGCAA52060.15253478472847284No Hit
CAGGAGCCTCGTGCAC47650.1396135707320732No Hit
CAGGAGCCTTCCAATG40590.11892790841584158No Hit
TCCTTAAACAGGGAGG38190.11189595522052205No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)