FastQCFastQC Report
Sat 3 Sep 2022
EGAF00004948784

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004948784
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2844645
Sequences flagged as poor quality0
Sequence length16
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ACAGCCGACCAGGGAT498051.7508335838039544No Hit
GAAGCAGTGGAACCTT162160.5700535567707042No Hit
GTTCTTCCTAACGTAA146220.5140184451838454No Hit
GATACGTACCGCTCGA141890.49879686217436625No Hit
CGCTTAAGATAATAGG118010.41484965610823143No Hit
TGTCCCATGAGACAAT115840.40722128771779953No Hit
CATGGAGGATCGACAT114460.40237006726674157No Hit
AAAGCATGATCTTTGT104650.3678842175385681No Hit
TGAGCGCACAGGACAC101850.3580411615509141No Hit
TGTCGAAACTTCGCAA95270.33490997997992716No Hit
TAATTGCCTGTCTGGC93570.32893383884456584No Hit
GGGGGGGGGGGGGGGG80300.2822847842173628No Hit
GGAAGGACTAGGTAAT79980.2811598635330595No Hit
AATGATGGAAAGCTAA75840.2666062021798854No Hit
CATGTCAGAGGTTTGT75000.2636532853835892No Hit
TCGACCTTGTTTCGCC72170.2537047680817817No Hit
ATGGGTACTTGGCTGC58540.20579017768473745No Hit
GCTATGATGACCTGCG56460.19847819323676594No Hit
AAACGACCTAGGGAGG55080.1936269727857079No Hit
CAGCTCACTGTTTACG53720.18884605987741881No Hit
AGCCTACCTTAACTCG53590.1883890608494206No Hit
TTGCGATGACATTCAG51890.18241291971405924No Hit
TGTTCCTCTTTATGGC51120.17970607931745436No Hit
CCTGTTGACCCTAGTA48090.16905448658795738No Hit
CAATGTGACCAACGCC47760.16789441213226958No Hit
CTGCCTTGACCATAAC47690.16764833573257823No Hit
GTGAGATCTCGATTAC47030.16532818682120265No Hit
CACAGCTCTGGACTGA46060.16191827099690823No Hit
TAACCAGACATCACAC45790.1609691191695273No Hit
AGCTTGTGACTCACTC44980.15812166368738453No Hit
CATGATGTGTCATGTG44940.1579810486018466No Hit
CTATTCAACCGAACGA44560.15664520528923645No Hit
CATGCAAACGAAGGCT44330.15583666854739345No Hit
ATGGGTACTTTCGGGC44320.15580151477600895No Hit
ATGCCGCGATGCCACG43290.15218067632340768No Hit
TGGGCCATGCGTTCTC42760.15031752644003032No Hit
AGAACGCGAGGAATAT42750.15028237266864583No Hit
TTGTTTGTGATACGCT42320.14877076049911325No Hit
GGGCTGACTAATACAG41910.14732945587234964No Hit
CATTAGTCTATTCTGG41560.14609907387389287No Hit
ATTAGCGTGGTCGGTC41150.14465776924712925No Hit
CACTATACTACGCCAC40840.1435680023342104No Hit
CCGCTATTGTTCGCAA40330.14177515999360202No Hit
GCATCTCTGAGCCTAT40000.14061508553791421No Hit
GGGTCGTACCGCTCGA39380.13843555171207655No Hit
AGCTCGGACCTTAAGC38300.13463894440255286No Hit
GCAGATACTCGGCTCA37700.13252971811948414No Hit
GGCTTGCGAGTACGTT37660.13238910303394624No Hit
CCCAATGCTGGAATGC37400.13147510497794979No Hit
ATAGGAAACAGACTTC37220.1308423370930292No Hit
AACGTCCCTTACAGAA36900.12971741640872586No Hit
GGTAGCCTGTGCCACG36530.12841672686750016No Hit
TTGACGTGACCTCAAA36300.12760819012565716No Hit
CTGCCATTGCACAGTT36010.12658873075550728No Hit
CTGATTACTGCTTTGA35950.1263778081272004No Hit
ATAGCCAACATGGCCC35790.12581534778504874No Hit
TGTTTGTTGCGCTCGA35720.1255692713853574No Hit
TTGTAACCTCATCCTC35590.12511227235735917No Hit
GATACCATGTCTGGAT35560.12500681104320574No Hit
AACCAACACCGGAATG35540.12493650350043678No Hit
GGGATCAGATGAGTAA35000.12303819984567493No Hit
TGGAGTTACAAGTCTC34910.12272181590321464No Hit
CGATCAAACCGATCGC34410.12096412733399071No Hit
TCAGGCTCTTAAAGCA34410.12096412733399071No Hit
CCTACGGGATGGAACG34320.1206477433915304No Hit
CGCTTACTGGCCACGT34200.12022589813491666No Hit
CGCTGAGTGTTAGCTG34070.11976889910691843No Hit
ATCTTACTGCGCACTG34070.11976889910691843No Hit
CGCTTCCCTGCGCTGT33450.11758936528108077No Hit
TTCTAACACTACGTTG33260.11692144362477566No Hit
CATGTTACTAACGTGG33110.11639413705400849No Hit
TCCAAAGTGAAGGCCA32680.11488252488447592No Hit
CTCGGATCTTTCTGAG32650.11477706357032248No Hit
TGGGTGCACTTCTGAG32560.11446067962786219No Hit
CCTCCCTTGTTTCGCC31650.11126168643187462No Hit
GCATAGTACGCTCCTT31460.11059376477556954No Hit
TACAACCGATTCCATT31310.11006645820480236No Hit
CCTTCAGTGTAGCTTG31130.10943369031988173No Hit
AGCCGGTACGCGCAAA31010.109011845063268No Hit
GTCCTGACTTTACGAC31000.10897669129188352No Hit
TACGCCTTGGGTTGAG30980.10890638374911456No Hit
CTTAGGCCTTATGACC30940.10876576866357666No Hit
AGTGGTACTCAACGCC30940.10876576866357666No Hit
AACCACTGAAAACATG30500.10721900272265959No Hit
GTGTACTGAATCACAC30460.10707838763712167No Hit
CGAGTCTCTTACTTTC30390.10683231123743034No Hit
ATCGCAATGTAACTCG30180.10609408203835627No Hit
ACCTGCTTGCCAAACT30150.10598862072420283No Hit
AACAGCTACTCGAGAG30100.10581285186728046No Hit
TATCTCCCTGGAATTA30060.10567223678174253No Hit
TGAGATAGACTCATCC29980.10539100661066672No Hit
GCATGGGCTATGTGGG29950.10528554529651328No Hit
GTAAGAAACGACAAAT29660.1042660859263634No Hit
ATTGAGAGATGATCAC29610.104090317069441No Hit
TGGTCCTTGTTTCTGT29420.10342239541313591No Hit
AGAACAATGAGTCGGA29420.10342239541313591No Hit
TTCACGCTGTGGGCAA29370.10324662655621351No Hit
CATGTCAGAACAGGTG29340.10314116524206007No Hit
ACCTCCATGGAATTGA28850.10141863044422063No Hit
GTTGCTAGACGCTCGA28700.10089132387345345No Hit
GAAAGTAACCCTGCGA28590.10050463238822419No Hit
TTCTATGACCAACGCC28510.10022340221714837No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)