FastQCFastQC Report
Fri 2 Sep 2022
EGAF00004948787

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004948787
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1578651
Sequences flagged as poor quality0
Sequence length16
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GCCGTTTACAGTCTGT252241.5978199107972566No Hit
AAATAGGTGTTGCGTA133330.8445818613487085No Hit
GGCTTGCGACGACATT128610.8146829159833301No Hit
TATCACTACTGGTCCG115900.7341711372557963No Hit
ATGGGTTACCATGCGC113720.7203618785912782No Hit
GTGTTGTGAGGGTAGT78010.4941560864307564No Hit
CTAATCTTGCCACTTC73750.46717102133403776No Hit
CTGCTTTCTCCACTTC67970.4305574823060955No Hit
AGAGAATTGCCTCCTA62650.39685782354681304No Hit
CTGGCCAGAGGAATGC48430.30678091611128744No Hit
AGCCGAGCTGCCCTTT48190.3052606307537258No Hit
AATGGTGCTTCGTACA44770.2835965644084728No Hit
GGGGGGGGGGGGGGGG43520.27567841150450606No Hit
TCCCTGTGACCCGCAA37940.24033177694119853No Hit
GCTCCTAACCTATCTT34200.21664066345253005No Hit
GAGAGAAGACTCACGG33160.2100527602364297No Hit
TGCCGTTACAATCTGC32190.20390827358295152No Hit
TTGTCAACTAATACAG31270.19808051304563198No Hit
CTTAATCTGGGAATTA31150.1973203703668512No Hit
TCTTTCCACCGAGTGA30490.19313958563355677No Hit
GCTGTTCTGATAGGTA30310.19199937161538555No Hit
GTAATCGTGATCCTCC29250.18528477795282175No Hit
TCGTATACTTTCTGGA29050.18401787348818707No Hit
GGGATGTGAAGGTGCA28240.1788869104064166No Hit
TAGCGCGACAAGACAT27700.175466268351903No Hit
AGTCCTGCTCCTAGTA26820.1698918887075104No Hit
GTTGTTGGATTCCATT24390.15449899946219905No Hit
TTGCGTCACCACTCAA24010.15209188097939316No Hit
TGCAATGACACCTTGA23990.1519651905329297No Hit
GCAAATCTGGAATTGA23770.15057159562183156No Hit
TGTCAATCTGGTGTCC22720.1439203471824995No Hit
CCTTTCTACTCGGGCT22220.14075308602091277No Hit
TTGTTTGTGGCGCTGT21600.13682568218054528No Hit
TACAACCGATCGCTAA21410.13562212293914236No Hit
CAAGTGGGATAGCGAG21350.13524205159975194No Hit
GGTTGAACTTCTTTGT21060.13340504012603166No Hit
TACGCCTTGCTGATCA20610.13055450508060362No Hit
AATCCAGACTACCAAC20260.12833742226749295No Hit
AGAACGCGAGGAGTCA19980.12656375601700437No Hit
TAAGGGCGATTTCTTG19610.12421998275743024No Hit
CTGCCATTGTCTTTGT19530.12371322097157636No Hit
CCTTTCTACTCATTTC19160.12136944771200221No Hit
CCCACCTCTCATGATC19030.12054595980998967No Hit
TCTTTCCACTTCGCAA18900.11972247190797712No Hit
TTCCACTCTCGAATCT18880.11959578146151364No Hit
GAGGTGCCTTCGTACA18730.11864560311303765No Hit
GTGGTAACTTTTCCGC18730.11864560311303765No Hit
GCTCCTAACGAATAGT18680.118328876996879No Hit
GAGAGGTTGATGTGGG17700.11212104512016904No Hit
CGGAATTTGAGAGGCT17390.1101573431999853No Hit
AGCACATTGCTGGAAG17050.10800360561010634No Hit
TATTGCTTGTTCGTTT16590.10508972534144659No Hit
CTTAGAGACGCTCTTC16240.1028726425283359No Hit
ATGTGTGTGCCTTTGC16180.1024925711889455No Hit
CTAATCACTGCTCAGC15960.10109897627784735No Hit
CGTTTGCTGGCTAATC15930.10090894060815214No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)