FastQCFastQC Report
Sun 11 Sep 2022
EGAF00004948791

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004948791
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences30728118
Sequences flagged as poor quality0
Sequence length8
%GC62

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AGCTGCGT3008619597.9109589464607No Hit
AGCTGCGA1064280.34635378580621173No Hit
AGCGGCGT726840.23653905520670027No Hit
AGCTGCGG652410.2123169404647561No Hit
CGCTGCGT423530.13783141551330935No Hit
AGCAGCGT400160.1302260034278702No Hit
TGCTGCGT340890.11093748077900507No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)