FastQCFastQC Report
Sun 4 Sep 2022
EGAF00004948797

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004948797
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3270559
Sequences flagged as poor quality0
Sequence length16
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGACACCTGGCTCCTT93420.2856392439335294No Hit
TCGCGGTGAGTCTTGA87920.2688225468490249No Hit
GGGGGGGGGGGGGGGG79840.2441172900412437No Hit
GTTAAGAGAGTACGTT61690.18862218966237881No Hit
CGCTTACTGATCACAC57420.17556631756222713No Hit
TACCAGTGATACGATC52580.16076762412786316No Hit
ATCTTACTGGTTTGGT52520.16058416925057764No Hit
TTGTGGTGAAAGACAT51220.15660931357605842No Hit
ATAGATGGAGAGTAAT49980.15281791277882464No Hit
ATTCCTAACTGCGTGC49450.15119739469613605No Hit
ATATGCCGAGAACAGC46610.14251386383795553No Hit
TGGAACACTTGAGGCA45420.13887534210512636No Hit
CTTTCTGCTCTTGTGA42350.12948856755068477No Hit
CTTGACGCTCAGGGTA42230.12912165779611376No Hit
AGCTCTGCTGGCCTGT40630.12422952773516699No Hit
AGGTAGCGATTGACCA40530.12392376960635781No Hit
GCTATACGACAGGTGA40360.12340398078738223No Hit
GCGGTTCGAAGCAAGC38400.11741112146272242No Hit
TGTGACTGACCGTTAA37620.11502620805801088No Hit
TGTACCCTGCTGAGAG35940.10988947149401676No Hit
ACGCTCTTGCCTCAAA35820.10952256173944576No Hit
ACTGGAACTCTGGAAG35760.10933910686216025No Hit
ACCCTTTCTAGGTGAC34990.10698476927032963No Hit
TTCCAAACTCCGCTAG34770.10631210138694945No Hit
AGTTCACGACCAGAGA34150.10441640098833257No Hit
ACATGTGTGTCAATGC33500.10242897315107294No Hit
TCCCAGACTCCTAACA33280.10175630526769276No Hit
ACACTCCACCGTACAT33200.10151169876464544No Hit
TCAGTCCACCCAGCAC32960.10077787925550341No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)