FastQCFastQC Report
Fri 2 Sep 2022
EGAF00004948799

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004948799
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2778089
Sequences flagged as poor quality0
Sequence length8
%GC62

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GAGAAGGG270768797.46581193043131No Hit
GAGAAGGA170290.6129753222448957No Hit
GAGCAGGG149700.5388596261674842No Hit
GAGAAGTG42900.1544226984808622No Hit
GAGATGGG38160.13736061011724246No Hit
GAGAAGGC36090.12990944494578827TruSeq Adapter, Index 20 (100% over 8bp)
GAGAAGCG33880.12195433623616811No Hit
GAGAACGG33490.1205504935227057No Hit
GTGAAGGG31070.11183946950583656No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)