FastQCFastQC Report
Sat 3 Sep 2022
EGAF00004948803

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004948803
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences4837574
Sequences flagged as poor quality0
Sequence length8
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CAGGAAGA472174597.60563869410576No Hit
CAGGAAGC274770.567991311347382No Hit
CAGGAACA115010.23774313323165702No Hit
CAGGAATA105260.21758840278205566No Hit
CACGAAGA89790.18560956380202143No Hit
CAGGAAAA75220.1554911614788735No Hit
CAGCAAGA73960.1528865501592327No Hit
CAGGATGA68280.14114512770243928No Hit
AAGGAAGA59350.12268546176244538No Hit
CAGTAAGA53350.11028255071653685No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)