FastQCFastQC Report
Sat 3 Sep 2022
EGAF00004948814

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004948814
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences4259539
Sequences flagged as poor quality0
Sequence length8
%GC37

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TCATCCTT410515796.37561717359556No Hit
TCATCCTA387390.9094646157718007No Hit
TCCTCCTT358480.8415934212599063No Hit
TCATACTT116710.2739967869762432No Hit
TAATCCTT98830.23202041347666966No Hit
TCAACCTT95990.22535302529217363No Hit
ACATCCTT88810.2084967410792576No Hit
TCATCATT86810.20380139728735902No Hit
TCATCCAT86720.2035901068167236No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)