FastQCFastQC Report
Sun 4 Sep 2022
EGAF00004948823

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004948823
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences5244344
Sequences flagged as poor quality0
Sequence length16
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTCCTAGTGAACGTAA274460.5233447691455786No Hit
GATGAATGACTCCTAC255210.4866385576537314No Hit
CGACCAGACGCGCTGT252420.4813185405076402No Hit
TAGCTTTACCCTATCC243290.463909308771507No Hit
CCAGGACTGTAACTCG188820.3600450313709398No Hit
ATCTGTACTGGGACTA172250.3284490872452303No Hit
CTTCCTTTGGCTCAGC164930.3144911927974214No Hit
GTTCTCGACCGTAGAG154400.2944124184073356No Hit
CGATCAAACCCGGCTA150060.28613683618008273No Hit
AGACCATTGAATCCAC139480.26596272098092727No Hit
TGCTGCTACTTTCTTG134290.256066344999489No Hit
GGGGGGGGGGGGGGGG124650.23768463701084444No Hit
ACAGCCGACTTGCGTA123000.23453839031154328No Hit
AACTTACCTCACCTAA111460.2125337315782489No Hit
CGCGTTGGAGCGGTTC107410.2048111260436005No Hit
ATCGAAAGATTTCCGC104400.19907160933760257No Hit
CCCTGAACTAGCTTTG100730.19207359395188417No Hit
AGTGGAGTGAGTTGAA99540.1898044826960245No Hit
GTAACTGTGTGAAAGT96360.1837408072391895No Hit
CAATTCGGATAACGGG95970.18299714892844557No Hit
AAGAACCCTTAACCCA86640.1652065539560334No Hit
TTCCTAAACTAATGCC86610.16514934947059157No Hit
GGGTAGAACCAGTCTA84680.16146919424049985No Hit
TTTAGTCTGAGCAATA83850.1598865368099423No Hit
CGCGATCGATATCTGG81660.155710609372688No Hit
GTGAAGCGATCCCAGG81070.15458558782566512No Hit
TCCGGGAACGTTCTCC79760.15208765862803814No Hit
TGGAACACTCCTAGTA79540.1516681590681313No Hit
TGCAGATACTGCCACG78540.14976134288673665No Hit
CTTTAACTGTCCGTAA75940.14480362081511053No Hit
AGTCCTGCTCGAACGA75130.14325909970818085No Hit
TGATAGAGAGACTGTT73140.13946453550720547No Hit
AGGTGTGGATCATGTG73070.13933105837450785No Hit
TCTCAGAGATGCATGT71410.13616574351339272No Hit
TGCAGTATGACACCGC71030.13544115336446275No Hit
CTATTGGGACTTGTGA71020.13542208520264878No Hit
CACATCCTGAGCCTAT70310.13406824571385859No Hit
GGCAACAGAATAGCAA70060.13359154166850992No Hit
CATAGGTACAAGGTGC69980.13343899637399834No Hit
ATTTCTGACGGGTAGT69880.13324831475585888No Hit
CTTAGATCTTGTCACA68630.13086479452911554No Hit
TACGTTTACTGCACCG68340.1303118178365111No Hit
TGGCAATTGAGTGGTG68020.12970163665846482No Hit
TCAAAGCACTCTGCAA67200.1281380473897212No Hit
TCTATGGGATGCTCAA66580.1269558213572565No Hit
ATGTACGTGTACTTTC65380.12466764193958292No Hit
CGAGTCTCTGCTACGC64610.12319939347990902No Hit
TGAACTGTGAACGTAA64450.12289430289088588No Hit
AGAGTACCTTAATCGC64020.12207437193288617No Hit
TGAGGGATGTACGTTG63900.12184555399111881No Hit
TTCTTAGACGTCCCGA63760.12157859972572356No Hit
GCAACTTGAAGGTGCA62780.11970991986795679No Hit
TCCATTTGAAATCTGC62260.11871837545363156No Hit
TACTGTTTGCTTAAGC61760.11776496736293424No Hit
GGTCTAAACTCCTACC60460.11528610632712119No Hit
CTACAACGAATCTGTG60330.11503822022353988No Hit
CTCAATTTGGAATCTC60060.11452337985456332No Hit
CACCAGGTGCGCCACA59640.11372251705837756No Hit
TTGCGGTCTTTTGGGT59540.1135318354402381No Hit
CATTCTATGCCTAGCG58650.11183476903879684No Hit
GGGTGTGCTCGCAAAG58400.11135806499344818No Hit
CTAGCTCACGAATAGT57970.11053813403544847No Hit
TCCGGGTGAACACCTA56940.10857411336861197No Hit
ACCAAGTTGAAGCTAA56250.10725841020344966No Hit
CACATTACTGATGGAC56050.10687704696717072No Hit
AGCCAATTGTTATGGC55860.10651475189270573No Hit
CTTTCGTCTCGAACGA55550.10592363887647341No Hit
TCGGACCGATAGGCGA55390.10561854828745026No Hit
AGACTACTGGCCCTAG54920.10472234468219477No Hit
CGAGTCTCTTGGAACG54920.10472234468219477No Hit
TGTAAGCACGCGCTGT54780.10445539041679952No Hit
TGCTAGTGAAGGCGTA54710.10432191328410187No Hit
TGCGCAGACATCAGGG54660.10422657247503216No Hit
ATGTCCAGACCGCTAG54420.10376893659149744No Hit
CATAGTCGAAGATTCC54350.10363545945879979No Hit
GGGATGTGACTGGAAG54150.10325409622252088No Hit
ACCTCAGCTAATCCGT54050.10306341460438141No Hit
GAGTGTTACACCTGCG53910.10279646033898614No Hit
GTAATCTCTACACAAA53630.10226255180819566No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)