FastQCFastQC Report
Sat 3 Sep 2022
EGAF00004948830

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004948830
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences4174403
Sequences flagged as poor quality0
Sequence length8
%GC75

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CCCACCCA394921994.60559989057118No Hit
CCCCCCCA1047332.5089336127824744No Hit
CCCACCAA344330.8248604650772817No Hit
CCCACACA155130.3716220019964531No Hit
CCCACCCC137960.33049037191665487No Hit
CCAACCCA100500.24075298911005955No Hit
CCCAACCA100320.24032178972657886No Hit
ACCACCCA89350.21404258285556044No Hit
CACACCCA68520.1641432319783212No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)