FastQCFastQC Report
Fri 2 Sep 2022
EGAF00004948835

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004948835
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2834957
Sequences flagged as poor quality0
Sequence length8
%GC37

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TATTGGTG278701498.30886323849003No Hit
TATTGGTA64950.22910400404662223No Hit
TAATGGTG51540.18180169928503326No Hit
AATTGGTG41730.14719799982856882No Hit
TATTGGGG37080.13079563464278293No Hit
TATTGGAG36610.12913776117239167No Hit
TATAGGTG30030.10592753258691402RNA PCR Primer, Index 39 (100% over 8bp)

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)