FastQCFastQC Report
Fri 2 Sep 2022
EGAF00004948836

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004948836
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2774675
Sequences flagged as poor quality0
Sequence length8
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CATCAGTG268603896.80549974321316No Hit
CATCAGTA112450.4052726895942768No Hit
CATAAGTG77530.2794201122654005No Hit
CATCACTG67500.24327173452746717No Hit
CAACAGTG66870.24100119833854416No Hit
CAGCAGTG61990.22341355293863246No Hit
CCTCAGTG50690.1826880625658861No Hit
CATCAGAG50620.18243578076711686No Hit
CATCAGGG48770.17576833322821592No Hit
AATCAGTG47380.17075873750979845No Hit
CTTCAGTG46480.16751511438276553No Hit
CATCAGTC45950.16560498076351285No Hit
CATCAGTT35780.12895203942804112No Hit
CATCATTG34130.1230053970284808No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)