FastQCFastQC Report
Fri 2 Sep 2022
EGAF00004948841

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004948841
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2998621
Sequences flagged as poor quality0
Sequence length8
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTGCTAA292729697.62140663991882No Hit
CGTGCAAA122020.4069203810684978No Hit
CGTGCGAA65000.21676630691241072No Hit
CGAGCTAA59040.19689050400167277No Hit
CCTGCTAA47280.1576724767818274No Hit
CGTGGTAA46920.15647192492815865No Hit
CGTCCTAA39500.1317272172775419No Hit
CGGGCTAA36600.12205610512298821No Hit
CGTTCTAA34900.11638683248066362No Hit
AGTGCTAA33050.11021732989931038No Hit
CGTGCTTA31530.10514833318382016No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)