FastQCFastQC Report
Sun 11 Sep 2022
EGAF00004948842

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004948842
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences18367595
Sequences flagged as poor quality0
Sequence length8
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TAAGCCAC1796361297.80056670456855No Hit
TAAGCCCC1399930.7621738175302755No Hit
AAAGCCAC583780.31783148528699595No Hit
TAAGCCAA374900.204109465610495No Hit
TAATCCAC294860.16053272080530956No Hit
TAACCCAC265820.1447222676675961No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)