FastQCFastQC Report
Wed 8 May 2024
EGAF00004948848

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004948848
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2774634
Total Bases22.1 Mbp
Sequences flagged as poor quality0
Sequence length8
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CATCAGTG266675296.11184754457706No Hit
CATCAGTA112090.4039812097739738No Hit
CCTCAGTG87420.3150685820183851No Hit
CATAAGTG81210.29268725172401117No Hit
CAGCAGTG80150.28886692803447234No Hit
CATCACTG75890.27351355169726893No Hit
CAACAGTG75570.27236024643250245No Hit
CATCAGGG74140.26720641353057734No Hit
CTTCAGTG59230.21346959635036547No Hit
AATCAGTG57720.2080274371322488No Hit
CATCAGTC54140.19512483448267412No Hit
CATCAGAG51480.18553798446930297No Hit
CATGAGTG44020.15865155548443508No Hit
CATCAGTT39360.1418565475662736No Hit
CATCATTG34130.12300721464524692No Hit
GATCAGTG28930.10426600409279205No Hit
CATCCGTG28270.10188731198421126No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.12.1)