FastQCFastQC Report
Sat 3 Sep 2022
EGAF00004948851

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004948851
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2801932
Sequences flagged as poor quality0
Sequence length16
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GATGAATGACTCCTAC174190.6216781849095553No Hit
CTCCTAGTGAACGTAA144330.5151088606004715No Hit
TAGCTTTACCCTATCC127360.45454350783673547No Hit
CCAGGACTGTAACTCG99350.35457677059971476No Hit
ATCTGTACTGGGACTA91700.3272741808152375No Hit
CTTCCTTTGGCTCAGC88950.3174595243567653No Hit
GTTCTCGACCGTAGAG86620.30914383361195064No Hit
CGATCAAACCCGGCTA82140.2931548659996031No Hit
CGACCAGACGCGCTGT78860.28144865756913445No Hit
TGCTGCTACTTTCTTG70100.2501845155414193No Hit
GGGGGGGGGGGGGGGG67160.23969175554581623No Hit
ACAGCCGACTTGCGTA65840.23498072044574958No Hit
GGCAACAGAATAGCAA60560.2161365800454829No Hit
AACTTACCTCACCTAA59840.21356692453635565No Hit
CGCGTTGGAGCGGTTC57030.20353813011878946No Hit
ATCGAAAGATTTCCGC55010.1963288188292935No Hit
CCCTGAACTAGCTTTG53550.19111812849134097No Hit
GTAACTGTGTGAAAGT53150.18969054209738137No Hit
AGTGGAGTGAGTTGAA51700.18451554141927784No Hit
CAATTCGGATAACGGG50810.18133916169271774No Hit
TTCCTAAACTAATGCC47010.16777709095010157No Hit
AAGAACCCTTAACCCA46660.16652795285538693No Hit
GGGTAGAACCAGTCTA45540.16253071095230007No Hit
TTTAGTCTGAGCAATA45190.1612815728575854No Hit
GTGAAGCGATCCCAGG43930.15678467571661267No Hit
CGCGATCGATATCTGG43880.15660622741736774No Hit
TCCGGGAACGTTCTCC43400.1548931237446162No Hit
TGGAACACTCCTAGTA42070.15014639898470056No Hit
TGCAGATACTGCCACG41910.14957536442711672No Hit
AGTCCTGCTCGAACGA40180.14340105327324146No Hit
TGATAGAGAGACTGTT40080.14304415667475157No Hit
CTTTAACTGTCCGTAA39580.14125967368230208No Hit
CACATCCTGAGCCTAT38500.13740519041861116No Hit
CATAGGTACAAGGTGC38490.13736950075876217No Hit
GCAACTTGAAGGTGCA38380.1369769145004233No Hit
AGGTGTGGATCATGTG38090.13594191436480257No Hit
TGCAGTATGACACCGC37960.1354779487867657No Hit
TCTCAGAGATGCATGT37870.1351567418481248No Hit
ATTTCTGACGGGTAGT37830.13501398320872884No Hit
CTATTGGGACTTGTGA37800.13490691422918186No Hit
CTTAGATCTTGTCACA37240.13290829327763842No Hit
TCAAAGCACTCTGCAA37010.13208743110111168No Hit
TACGTTTACTGCACCG36460.13012449980941723No Hit
TGGCAATTGAGTGGTG35350.12616294756617935No Hit
ATGTACGTGTACTTTC34910.12459260253282378No Hit
GGTCGCATGGTACTAC34870.12444984389342782No Hit
CGAGTCTCTGCTACGC34860.12441415423357884No Hit
TCTATGGGATGCTCAA34670.12373605069644802No Hit
TGAGGGATGTACGTTG34380.12270105056082731No Hit
TGAACTGTGAACGTAA34310.12245122294188437No Hit
AGAGTACCTTAATCGC34260.12227277464263943No Hit
TTCTTAGACGTCCCGA34090.12166605042520662No Hit
GGTCTAAACTCCTACC33590.11988156743275712No Hit
GGGTGTGCTCGCAAAG33550.11973880879336116No Hit
GAGTGTTACACCTGCG33240.11863242933804247No Hit
TACTGTTTGCTTAAGC33110.1181684637600056No Hit
GCATGATACTTGCGTA32470.11588432552967025No Hit
TCCATTTGAAATCTGC32250.11509915301299246No Hit
CTACAACGAATCTGTG32100.11456380811525763No Hit
GGGATGTGACTGGAAG32050.11438535981601267No Hit
CTAGCTCACGAATAGT31620.1128507044425061No Hit
TCCGGGTGAACACCTA31510.1124581181841672No Hit
TTGCGGTCTTTTGGGT31460.11227966988492226No Hit
CTCAATTTGGAATCTC31440.11220829056522429No Hit
GTAATCTCTACACAAA31050.11081639383111368No Hit
CATTCTATGCCTAGCG30870.11017397995383187No Hit
AGCCAATTGTTATGGC30560.10906760049851318No Hit
AGACTACTGGCCCTAG30370.10838949696138236No Hit
CACCAGGTGCGCCACA30260.10799691070304347No Hit
CACATTACTGATGGAC30210.10781846240379851No Hit
CTTTCGTCTCGAACGA30190.10774708308410054No Hit
CGAGTCTCTTGGAACG30190.10774708308410054No Hit
TCGGACCGATAGGCGA30150.10760432444470458No Hit
TGTAAGCACGCGCTGT29530.1053915655340672No Hit
TGCTAGTGAAGGCGTA29220.10428518607874851No Hit
GGCTGACTGAAACTGA28860.10300035832418487No Hit
AGGCGATGACCTGCGA28630.10217949614765812No Hit
CATAGTCGAAGATTCC28580.10200104784841317No Hit
ACCAAGTTGAAGCTAA28390.10132294431128236No Hit
TAGTACCGAACGAGCA28110.10032363383551063No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)