FastQCFastQC Report
Sat 3 Sep 2022
EGAF00004948868

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004948868
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences4330707
Sequences flagged as poor quality0
Sequence length8
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CAGCTTAC422563597.57379106921803No Hit
CCGCTTAC141710.32722139826130003No Hit
CAGCATAC116900.2699328308287769No Hit
CAGCTTAA114160.2636059193106345No Hit
CAGCTAAC103880.2398684556586257No Hit
AAGCTTAC81460.18809861761601512No Hit
CACCTTAC74450.17191188413346828No Hit
CAGATTAC65560.15138405807642957No Hit
CATCTTAC47850.11049004238799809No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)