FastQCFastQC Report
Wed 8 May 2024
EGAF00004948872

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004948872
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3388373
Total Bases27.1 Mbp
Sequences flagged as poor quality0
Sequence length8
%GC24

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TTAGATTG333848498.52764143735061No Hit
TTAGATTA101530.29964233571687654No Hit
ATAGATTG53890.1590438833032845No Hit
TTAGAATG49170.14511389389538873No Hit
TTAGATAG36990.10916743817755602No Hit
TAAGATTG34390.10149413892744394No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.12.1)