FastQCFastQC Report
Sun 4 Sep 2022
EGAF00004948892

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004948892
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences4408344
Sequences flagged as poor quality0
Sequence length16
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TGGCCGATGGTTAGAA167670.38034690577686314No Hit
CATTCAACTAGGCATG161280.36585166674833No Hit
GTCGACCGATGCTCAA148550.3369746099669173No Hit
GGGGGGGGGGGGGGGG131510.2983206392241622No Hit
ACTGGGCACTTCTCGC131220.29766279582537114No Hit
TGTAAGCTGTTGTGAC126250.2863887210254009No Hit
GCTTTAGGAACTAGTC102960.2335570908259428No Hit
TAGTTGCGACATAGCT73850.16752322414040283No Hit
CATCAGTGATTCGCAA71490.16216973992955178No Hit
CAGGAGCCTCGTGCAC61920.14046090776944814No Hit
NNNNNNNNNNNNNNNN55000.12476340321898655No Hit
CAGGAGCCTTCCAATG53270.12083902708137115No Hit
TCCTTAAACAGGGAGG50380.11428327734859167No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)