FastQCFastQC Report
Sun 4 Sep 2022
EGAF00004948894

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004948894
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3409341
Sequences flagged as poor quality0
Sequence length16
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGACACCTGGCTCCTT96510.28307523360086306No Hit
TCGCGGTGAGTCTTGA93580.2744811973926926No Hit
GGGGGGGGGGGGGGGG88240.25881834641944No Hit
GTTAAGAGAGTACGTT64280.18854083531098825No Hit
CGCTTACTGATCACAC60120.1763390637662821No Hit
TACCAGTGATACGATC54990.16129216760658438No Hit
TTGTGGTGAAAGACAT54220.15903366662354984No Hit
ATCTTACTGGTTTGGT53470.15683382800371098No Hit
ATAGATGGAGAGTAAT52230.1531967614855774No Hit
ATTCCTAACTGCGTGC51780.15187685831367412No Hit
ATATGCCGAGAACAGC50610.1484451100667255No Hit
TGGAACACTTGAGGCA47100.1381498653258797No Hit
AGCTCTGCTGGCCTGT44110.12937984202812217No Hit
CTTTCTGCTCTTGTGA43680.12811860121941454No Hit
CTTGACGCTCAGGGTA43610.1279132829482296No Hit
AGGTAGCGATTGACCA42730.12533213896761866No Hit
GCTATACGACAGGTGA40800.11967122091923335No Hit
TGTGACTGACCGTTAA39280.11521288131635997No Hit
ACGCTCTTGCCTCAAA39210.115007563045175No Hit
GCGGTTCGAAGCAAGC39170.11489023831878362No Hit
ACTGGAACTCTGGAAG39010.11442093941321797No Hit
TTCCAAACTCCGCTAG37020.10858403427524557No Hit
ACCCTTTCTAGGTGAC36380.1067068386529831No Hit
AGTTCACGACCAGAGA36120.10594422793143894No Hit
TGTACCCTGCTGAGAG35880.10524027957309053No Hit
ACACTCCACCGTACAT34820.10213117432371828No Hit
TCAGTCCACCCAGCAC34530.10128057005738059No Hit
TCCCAGACTCCTAACA34400.10089926469660854No Hit
CACAGCTCTCTCTGGG34100.10001932924867299No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)