FastQCFastQC Report
Sun 4 Sep 2022
EGAF00004948906

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004948906
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3368798
Sequences flagged as poor quality0
Sequence length16
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TGGCCGATGGTTAGAA128780.3822728462792961No Hit
GTCGACCGATGCTCAA119140.3536572985379355No Hit
CATTCAACTAGGCATG113750.33765752651242376No Hit
GGGGGGGGGGGGGGGG95390.2831573754199569No Hit
TGTAAGCTGTTGTGAC88230.26190350386102107No Hit
ACTGGGCACTTCTCGC87800.2606270842003587No Hit
GCTTTAGGAACTAGTC81160.24091678990547966No Hit
TAGTTGCGACATAGCT51730.15355625359549607No Hit
CATCAGTGATTCGCAA50880.15103309845232632No Hit
CAGGAGCCTCGTGCAC42870.1272560717502207No Hit
NNNNNNNNNNNNNNNN40200.11933039618285217No Hit
CAGGAGCCTTCCAATG37520.11137503643732868No Hit
TCCTTAAACAGGGAGG36190.10742704074272189No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)