FastQCFastQC Report
Fri 2 Sep 2022
EGAF00004948910

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004948910
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3664784
Sequences flagged as poor quality0
Sequence length8
%GC62

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ACCAGTCC358384697.79146601818825No Hit
ACCAGTCA200800.5479176944671227No Hit
CCCAGTCC170120.46420198298180737No Hit
ACCAGACC70370.19201677370344336No Hit
ACAAGTCC48110.13127649542237688No Hit
ACCACTCC41250.11255779331060167No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)