FastQCFastQC Report
Thu 1 Sep 2022
EGAF00004948914

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004948914
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences534945
Sequences flagged as poor quality0
Sequence length8
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CATCAGTG51604896.46748731177972No Hit
CATCAGTA22270.4163044798998028No Hit
CAACAGTG15520.2901232837020628No Hit
CCTCAGTG15110.2824589443774594No Hit
CATAAGTG15030.28096346353363433No Hit
CATCACTG14930.27909411247885296No Hit
CATCAGGG12030.2248829318901943No Hit
AATCAGTG11970.22376132125732554No Hit
CAGCAGTG9870.18450494910691753No Hit
CTTCAGTG9770.1826355980521362No Hit
CATCAGAG9730.18188785763022366No Hit
CATCAGTC9420.17609286936040153No Hit
CATCAGTT8080.15104356522633167No Hit
CATCATTG7660.14319229079625007No Hit
CATGAGTG6200.11589976539644262No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)