FastQCFastQC Report
Sat 3 Sep 2022
EGAF00004948921

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004948921
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3923788
Sequences flagged as poor quality0
Sequence length8
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TAAGCCAC375503895.6993089331024No Hit
TAAGCCCC920822.3467628730196433No Hit
AAAGCCAC152940.3897764099385594No Hit
TAAGCCAA103000.2625014399350831No Hit
TAACCCAC98310.2505487044661944No Hit
TAAGCAAC79720.20317101739441581No Hit
TAATCCAC70870.18061628202135285No Hit
TAAGACAC42840.1091802105516404No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)