FastQCFastQC Report
Fri 2 Sep 2022
EGAF00004948922

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004948922
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3157598
Sequences flagged as poor quality0
Sequence length8
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AACGCGAA306547097.08233917047072No Hit
ACCGCGAA213820.6771602971625901No Hit
AACGCCAA94790.30019654180171135No Hit
AACGCAAA76920.2436028905516155No Hit
AACCCGAA71180.22542451572366085No Hit
AACGAGAA55070.1744047215636696No Hit
AAAGCGAA45390.14374850756809449No Hit
AACGCGAT40820.12927548091935706No Hit
AGCGCGAA32230.1020712579625399No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)